Lakehouse Tenants¶
A registry of all research programs and datasets onboarded to the KBase BER Data Lakehouse.
23
Registered Tenants
63
Total Databases
AI ALE¶
Database for AI-driven adaptive lab evolution of ADP1. Holds observed mutations crossed with conditions, passages, and strains. Key mutations are linked to specific phenotypes like growth with a novel DAHP biosynthesis enzyme and growth on a range of methoxylated aromatic compounds.
Databases (1)
aiale_dataset1
Arkin Lab¶
Leverages quantitative measurements, precision genetics, and model-driven experimentation to predict, control, and design biological function in the context of these webs.
Databases (1)
arkinlab_microbeatlas
BERVO data¶
BioEPIC data described using the Biological and Environmental Research Variable Ontology.
Databases (3)
bervodata_chessbervodata_fao_soilsbervodata_hwsd2
BRaVE BREAD¶
Bioenergy crop–pathogen interactions, including sorghum anthracnose (Colletotrichum sublineola), to support predictive modeling of pathogenicity and biocontrol.
Databases (0)
No databases registered yet.
ENIGMA¶
Create predictive models of the impacts of microbial communities on critical processes within ecosystems.
Databases (2)
enigma_coralenigma_genome_depot_enigma
ESE¶
Developing a distributed platform that will help map the molecular determinants of microbial functions back to genomes, accelerating scalable predictive biodesign approaches.
Databases (1)
ese_ganymede
Global Users¶
Shared datasets and reference genomes accessible to all K-BERDL users.
Databases (18)
globalusers_aisynbio_test_1globalusers_carbon_source_phenotypesglobalusers_demo_sharedglobalusers_demo_testglobalusers_demo_test_1globalusers_demo_test_2globalusers_gapmind_pathwaysglobalusers_genomes_test1globalusers_kepangenome_parquet_1globalusers_nmdc_core_testglobalusers_nmdc_core_test2globalusers_nmdc_core_test3globalusers_nmdc_core_test4globalusers_nmdc_flattened_biosamplesglobalusers_ontology2globalusers_ontology_source_2globalusers_phenotype_ontology_1globalusers_phenotype_parquet_1
ideas¶
Databases (1)
ideas_dataset1
KBase¶
Community-driven research platform for systems biology.
Databases (9)
kbase_genomeskbase_ke_pangenomekbase_msd_biochemistrykbase_ontology_sourcekbase_phenotypekbase_uniprotkbase_uniref100kbase_uniref50kbase_uniref90
KBase Knowledge Engine Science¶
Provides experimental phenotypes, protein structures, and microbial ecology data for linking genotype to function.
Databases (10)
kescience_alphafoldkescience_bacdivekescience_fitnessbrowserkescience_interprokescience_mgnifykescience_paperblastkescience_pdbkescience_pubmedkescience_test_mikakescience_webofmicrobes
LAMBDA¶
By unifying structural biology data across BER-supported imaging resources, LAMBDA will transform how researchers discover, integrate, and analyze multimodal datasets. This will accelerate AI-driven insights into protein conformations, the relationship between genes and their expression, biological function and dynamics, and cells and their environment.
Databases (0)
No databases registered yet.
Microbial Discovery Forge¶
AI co-scientist and research observatory for K-BERDL-scale microbial discovery — powered by reusable skills, shared memory, and scalable data.
Databases (0)
No databases registered yet.
Microbial Ecosystems Lab¶
Use microbiome knowledge to better manage ecosystem function.
Databases (0)
No databases registered yet.
National Energy Technology Laboratory¶
Currently contains the NETL Produced Water DNA database.
Databases (1)
netl_pw_dna
National Microbiome Data Collaborative¶
Enabling microbiome science by connecting data, people, and ideas.
Databases (4)
nmdc_arkinnmdc_flattened_biosamplesnmdc_func_annot_freshwater_riversnmdc_ncbi_biosamples
OPAL¶
The Orchestrated Platform for Autonomous Laboratories (OPAL) is a multi-laboratory DOE project to turn biological discovery into a self-driving process — combining AI, robotics, and automated experimentation to accelerate breakthroughs across biology, biotechnology, and energy science.
Databases (0)
No databases registered yet.
Phage Foundry¶
Interdisciplinary capability building a high-throughput platform for rapid design and development of countermeasures to combat emerging pathogens.
Databases (7)
phagefoundry_acinetobacter_genome_browserphagefoundry_ecoliphages_genomedepotphagefoundry_ecoliphagesgenomedepotphagefoundry_klebsiella_genome_browser_genomedepotphagefoundry_paeruginosa_genome_browserphagefoundry_pviridiflava_genome_browserphagefoundry_strain_modelling
Planet Microbe¶
Enabling the discovery and integration of oceanographicomics, environmental and physiochemical data layers.
Databases (2)
planetmicrobe_planetmicrobeplanetmicrobe_planetmicrobe_raw
Plant Microbe Interfaces¶
Focuses on revealing the genomic bases underpinning the selection of symbiotic plant-microbe partnerships, assessing how the physical and chemical environment structures the host plant's microbiome, and determining how microbial community composition and host genetics combine to respond to environmental challenges.
Databases (0)
No databases registered yet.
Soil Microbiome Science¶
Advancing our understanding of how soil microbial communities respond to—and affect—changing environmental conditions.
Databases (0)
No databases registered yet.
PROTECT¶
Pro/Prebiotic Regulation for Optimized Treatment and Eradication of Clinical Threats (PROTECT) is pioneering microbiome engineering to design probiotic communities that prevent lung infections by pathogens.
Databases (2)
protect_genomedepotprotect_integration
Reference Data¶
Collection of reference data that are available to all users and regularly updated by the KBase team.
Databases (0)
No databases registered yet.
United States Geological Survey¶
Sharing produced water and river geochemistry data for cross-tenant analysis.
Databases (1)
usgs_produced_waters